Published results used RNA-Seq to investigate how cold responsiveness differs in two populations of A. arenosa: TBG (collected from Triberg, Germany) and KA (collected from Kasparstein, Austria). Each row corresponds to a gene; the first column contains the gene name; other columns correspond to expression measured in a plant sample. Three plants of each population were exposed to cold (vernalized, denoted by v), and three were not (non-vernalized, denoted by nv). Expression was measured in gene counts (i.e. the number of RNA transcripts present in a sample); the data were then normalized to allow comparison between samples.
Format
A tibble with 1088 rows and 13 variables:
gene.namea character vector
ka.nv.1a numeric vector
ka.nv.2a numeric vector
ka.nv.3a numeric vector
ka.v.1a numeric vector
ka.v.2a numeric vector
ka.v.3a numeric vector
tbg.nv.1a numeric vector
tbg.nv.2a numeric vector
tbg.nv.3a numeric vector
tbg.v.1a numeric vector
tbg.v.2a numeric vector
tbg.v.3a numeric vector
References
Pierre Baduel, Brian Arnold, Cara M. Weisman, Ben Hunter, Kirsten Bomblies, Habitat-Associated Life History and Stress-Tolerance Variation in Arabidopsis arenosa, Plant Physiology, Volume 171, Issue 1, May 2016, Pages 437–451 https://doi.org/10.1104/pp.15.01875https://doi.org/10.1104/pp.15.01875